miTEA - miRNA Target Enrichment Analysis

miTEA

miRNA Target Enrichment Analysis

miTEA is a tool for identifying and visualizing enriched miRNA targets in ranked lists of genes.
It searches for enriched miRNA targets that appear densely at the top of a ranked list of genes.

For further details see References.

Running example Usage instructions References

Step 1: Select organism

Step 2: Paste a ranked list of gene/protein names
Names should be separated by an <ENTER>. The preferred format is gene symbol. Other supported formats are: gene and protein RefSeq, Uniprot, Unigene and Ensembl. Use WebGestalt for conversion from other identifier formats.

Or upload a file:

Step 3: Select a target prediction tool

TargetScan MicroCosm EIMMo

Advanced parameters

P-value threshold:

Analysis name: (optional)

E-mail address: (optional - enter an e-mail address if you would like to receive a link to your results)

Output results in Microsoft Excel format

Include unresolved and duplicate genes in output

Run miTEA in fast mode

References

If you choose to use this application please cite:

Israel Steinfeld, Roy Navon, Robert Ach, Zohar Yakhini. "miRNA target enrichment analysis reveals directly active miRNAs in health and disease", Nucleic Acids Research 2012.
Eran Eden*, Roy Navon*, Israel Steinfeld, Doron Lipson and Zohar Yakhini. "GOrilla: A Tool For Discovery And Visualization of Enriched GO Terms in Ranked Gene Lists", BMC Bioinformatics 2009, 10:48.